Publications

The complete list of my publications can be found in my CV and in my Google Scholar page.

Journals

  1. Garyfallidis, E., O. Ocegueda, D. Wassermann, M. Descoteaux. Robust and efficient linear registration of fascicles in the space of streamlines , Neuroimage, 117:124-140, 2015.
  2. Ocegueda, O., E. Garyfallidis, M. Descoteuax, M. Rivera. “Symmetric Diffeomorphic Registration with Expected Cross-Correlation for Multi-Modal MRI, Medical Image Analysis (submitted), 2015.
  3. Renaud, E. M. Descoteaux, M. Bernier, E. Garyfallidis, K. Whittingstall, “Morphology of thalamus, LGN and optic radiation do not influence EEG alpha waves”, Brain function and structure (submitted), 2015.
  4. Porro, D., E. Olivetti, B. Thien, E. Garyfallidis, P. Avesani, “Visual Data Mining Tool for Brain Connectivity Analysis”, Data Mining and Knowledge Discovery, 2015.
  5. Newcombe, V., M. Correia, C. Ledig, G. Giulia, J. Outtrim, D. Chatfield, T. Geeraerts, A. Manktelow, E. Garyfallidis, J. Pickard, B. Sahakian, P. Hutchinson, D. Rueckert, J. Coles, G. Williams, D. Menon, ”Dynamic changes in white matter abnormalities correlates with late improvement and deterioration following TBI: A diffusion tensor imaging study”, Neurorehabilitation & Neural Repair, 2015.
  6. Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.
  7. Daducci, A., E. Canales-Rodriguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y-C. Lin, M. Mani, S. Merlet, M. Paquette, A. Ramirez-Manzanares, M. Reisert, P. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, and J-P. Thiran. Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI. Transactions in Medical Imaging, 33 (2): 384-399, 2014.
  8. Cote, M-A., G. Girard, A. Bore, E. Garyfallidis, J-C. Houde, and M. Descoteaux. Tractometer: Towards Validation of Tractography Pipelines. Medical Image Analysis, 17 (7): 844-857, 2013.
  9. Garyfallidis, E., M. Brett, M. M. Correia , G.B. Williams, I. Nimmo-Smith. QuickBundles, a method for tractography simplification. Frontiers in Neuroscience, 6-175, 2012.
  10. Tsiaras, V., P.G. Simos, R. Rezaie, B.R. Sheth, E. Garyfallidis, E.M. Castillo, A.C. Papanicolaou, Extracting biomarkers of autism from MEG resting-state functional connectivity networks., Computers in biology and medicine 41(12): 1166-77, 2011.
  11. Chamberlain S.R., A. Hampshire, L.A. Menzies, E. Garyfallidis, J.E. Grant, B.L. Odlaug, K. Craig, N. Fineberg, B.J. Sahakian, Reduced brain white matter integrity in trichotillomania: a diffusion tensor imaging study., Archives of General Psychiatry 67(9): 965-71, 2010.

Conferences

  1. Garyfallidis, E., M-A Côté, J. Hau, G. Perchey, L. Petit, S. C. Cunnanne, M. Descoteaux. Recognition of bundles in healthy and severely diseased brains. Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015.
  2. Côté M-A., E. Garyfallidis, H. Larochelle, and M. Descoteaux. Cleaning up the mess: tractography outlier removal using hierarchical QuickBundles clustering. Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015.
  3. Ocegueda O., E. Garyfallidis, M. Descoteaux, and M. Rivera. An algorithm and quantitative evaluation framework for registration of multi-modal brain MRI*, Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015.
  4. Ocegueda O., E. Garyfallidis, M. Descoteaux, and M. Rivera. An algorithm and quantitative evaluation framework for registration of multi-modal brain MRI, Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015.
  5. Tax C.M.W., D.S. Novikov, E. Garyfallidis, M.A. Viergever, M. Descoteaux and A. Leemans, Localizing and characterizing single fiber populations throughout the brain, Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015.
  6. Garyfallidis, E., M. Zuchelli, J-C. Houde, and M. Descoteaux. How to perform best ODF reconstruction from the Human Connectome Project sampling scheme? Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 6838, 2014.
  7. Garyfallidis, E., A. Rokem, B. Amirbekian, S. van der Walt, M. Zucchelli, J-O. Ocegueda-Gonzalez, S. St-Jean, G. Girard, M. Paquette, I. Nimmo-Smith, M. Brett, and M. Descoteaux. The new methods available in Dipy 0.7.0+ that you should know about. Proceedings of: Organization of Human Brain Mapping (OHBM). Hamburg, Germany, 2014.
  8. Zuchelli, M., E. Garyfallidis, M. Paquette, S. Merlet, G. Menegaz, and M. Descoteaux. Comparison between discrete and continuous propagator indices from Cartesian q-space DSI sampling. Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM). 6762, 2014.
  9. Garyfallidis E., S. St-Jean, M. Paquette, P. Coupé, and M. Descoteaux. Constrained spherical deconvolution on signal and ODF values. Proceedings of: ISBI HARDI Reconstruction Challenge. 16, 2013.
  10. Garyfallidis E., S. St-Jean, M. Paquette, P. Coupé, and M. Descoteaux. Deconvolution enhanced Generalized Q-Sampling 2 and DSI deconvolution. Proceedings of: ISBI HARDI Reconstruction Challenge. 17, 2013.
  11. Paquette, M., E. Garyfallidis, S. St-Jean, P. Coupé, and M. Descoteaux. Particle Swarm Optimization in Multi-Tensor Imaging. Proceedings of: ISBI HARDI Reconstruction Challenge. 15, 2013.
  12. Garyfallidis E., Gerhard S., Avesani P., Nguyen T., Tsiaras V., Nimmo-Smith I., Olivetti E., A software application for real-time, clustering-based exploration of tractographies, 18th Annual Meeting of the Organization for Human Brain Mapping, 2012.
  13. Olivetti E., Nguyen TB., Garyfallidis E., The Approximation of the Dissimilarity Projection, 2nd IEEE International Workshop on Pattern Recognition in NeuroImaging, 2012.
  14. Garyfallidis E., Nimmo-Smith I., Cartesian grid q-space reconstruction, HARDI Reconstruction Workshop of the 9th IEEE International Symposium on Biomedical Imaging, 2012.
  15. Correia M.M., Williams G.B., Yeh F-C, Nimmo-Smith I., Garyfallidis E., Robustness of diffusion scalar metrics when estimated with Generalized Q-Sampling Imaging acquisition schemes, 19th Proceedings of the International Society of Magnetic Resonance in Medicine, 2011.
  16. Garyfallidis E., Brett M., Amirbekian B., Nguyen C., Yeh F-C., Olivetti E., Halchenko Y., Nimmo-Smith I., Dipy - a novel software library for diffusion MR and tractography, 17th Annual Meeting of the Organization for Human Brain Mapping, 2011.
  17. Garyfallidis E., Brett M., Nimmo-Smith I, Fast Dimensionality Reduction for Brain Tractography Clustering, 16th Annual Meeting of the Organization for Human Brain Mapping, 2010.
  18. Garyfallidis E., Brett M., Tsiaras V., Vogiatzis G., Nimmo-Smith I., Identification of corresponding tracks in diffusion MRI tractographies, 18th Proceedings of the International Society of Magnetic Resonance in Medicine, 2010.

PhD Thesis

PhD thesis cover

Garyfallidis, E., "Towards an accurate brain tractography", University of Cambridge, 2012.